باختصار
مقال شهير مفتوح الوصول عن سبب عدم صمود كثير من نتائج الأبحاث، منضَّد في مستلة من سبع صفحات. نص برمجي واحد يصنع الطبعة الإنجليزية وترجمة إسبانية، ولكل منهما تقطيع كلماتها وفاصلتها العشرية وتسمياتها.
ما الذي ستنضده
مستلة من سبع صفحات لمقال John Ioannidis Why Most Published Research Findings Are False (PLoS Medicine، 2005)، مختصرة ومنضدة على صفحة قياسها 210 × 280 مم في عمودين. يفتتح الصفحة الأولى شريط كحلي رُسمت عليه بخفة، خلف العنوان، منحنيات الصيغة التي يقوم عليها المقال. الصيغ الثلاث معادلات معروضة مرقمة؛ وفي كل خلية من جداول 2×2 صيغة بحرفي α وβ الحقيقيين؛ والشكل 1 محسوب من المعادلة (2)، وكذلك العمود الأخير من الجدول 4. والنص البرمجي نفسه ينضّد ترجمة إسبانية بتقطيع الكلمات الإسباني، والفاصلة العشرية في الجداول والأشكال، وعلامتي التنصيص « »، وتسميات بالإسبانية. وتختم المقال ثلاثة وثلاثون مرجعًا بأسلوب فانكوفر، أعيد بناؤها بصيغة BibTeX من قائمة مراجع الورقة.
تجيب هذه الوصفة عن
- كيف أنشر ورقة واحدة بلغتين من نص برمجي واحد، مع طباعة كل لغة؟
- كيف أصنع جدولًا فيه صفوف رأس، وخلايا مدمجة، وعروض أعمدة، ومحاذاة لكل خلية؟
- كيف أنضد الرياضيات (مضمّنة، ومعروضة، ومعادلات) وأبقيها متجهية في ملف PDF؟
- كيف أعيد تنضيد ورقة بحثية مفتوحة الوصول من arXiv أو PubMed Central بـPostext، مع استشهاداتها وأشكالها وسطر ترخيصها؟
الجواب المختصر
// The Cookbook composes the pen once per edition: content.<LANG>.md and each named slot
// replace the @content markers. What else follows the language is set here.
const edition = {
// Hyphenation patterns and the words the engine writes (Tabla, Continúa) follow the
// locale, an exact code (gotcha: hyphenation-locales).
locale: t({ en: 'en-us', es: 'es' }),
// Table 1 / Tabla 1, Figure 1 / Figura 1, counted through the essay; tables caption above.
resourceTypes: defaultResourceTypes(LANG).map((type) => ({ ...type, shortLabel: type.name,
numberingTemplate: '{n}', resetOn: 'never',
...(type.id === 'table' && { captionStyle: { position: 'above' } }) })),
// Vancouver numbers in brackets, [2–4]; the CSL locale writes the list's words (2nd ed.,
// 2.ª ed.). The titles of the works stay in English in both editions.
citations: { style: 'elsevier-vancouver', locale: t({ en: 'en-US', es: 'es-ES' }),
marker: 'brackets', collapseRanges: true,
bibliography: { fontSize: em(0.78), lineHeight: pt(9.4), entrySpacing: pt(0.8),
labelWidth: mm(6.4), doi: 'hide' } },
};
// The numbers the script writes (Table 4's PPV, the figure axes) take the edition's decimal
// sign, 0.85 or 0,85. Formulas keep their symbols; content.es.md writes 0{,}05 inside $…$
// so that TeX sets no space after the comma.
const number = (x, digits = 2) => x.toLocaleString(t({ en: 'en-US', es: 'es-ES' }),
{ minimumFractionDigits: digits, maximumFractionDigits: digits });
registerCitationEngine(createCiteprocEngine({ styles: STYLES, locales: LOCALES }));
await initMathEngine(); // before the tables are built (gotcha: math-bundle)
المكونات
- الميزات
- الرياضياتجداول من البياناتتقسيم الكلمات ولغة المستندنمط الجدول«شكل» و«جدول» بلغتكالاستشهادات بأسلوب توثيققائمة المراجع من البيانات المرجعيةالأشكال والجداول بوصفها موارداستشهادات تضع الأشكالتعليقات مرقّمةموضع الأشكالنمط التعليقصفحات افتتاح مصمَّمةسمات العنوانإطارات بعرض الصفحةإطارات التنبيهالشارات داخل السطرالترويسات وأرقام الصفحاتالتصدير إلى PDF
- تستخدم أيضًا
- أعمدة داخل الإطارأنماط العناوينالترويسات بحسب دور الصفحةأنماط الفقراتالخطوط المضمَّنة في PDFأنواع موارد مخصّصةالنص المرتفع والمنخفضفصول بلا أرقام
- الخطوط
- Gelasio, Sofia Sans Semi Condensed (SIL OFL 1.1)
- الأصول
- لا شيء: كل صورة مرسومة بالكود
طريقة التحضير
#1 · نص برمجي واحد، وطبعتان
الشيفرة هي الجواب المختصر أعلاه. يركّب كتاب الوصفات النص البرمجي مرة لكل لغة، ويضع content.en.md أو content.es.md حيث تقف علامة @content؛ وتتبع كل خانة مسماة (content.corollaries.es.md وcontent.resources.es.md) القاعدة نفسها، والخانة التي لا ملف إسبانيًا لها تأخذ الملف الإنجليزي، وبذلك تتقاسم الطبعتان ملف BibTeX واحدًا. وكل ما سوى ذلك مما يتغير مع اللغة يمر عبر LANG: يختار locale أنماط تقطيع الكلمات ('es' هو الرمز الذي يقطّع الإسبانية)، ويكتب defaultResourceTypes(LANG) كلمتي Tabla وFigura، وتكتب إعدادات CSL الإقليمية كلمات قائمة المراجع، ويعطي toLocaleString الأرقام التي يحسبها النص البرمجي فاصلتها العشرية. وتتبع الترجمة أعراف الطباعة الإسبانية: علامتا التنصيص « »، و0,05 في المتن و0{,}05 داخل الصيغة، كي لا يعامل TeX الفاصلة علامةَ ترقيم ويضع بعدها مسافة. ولتنشر ورقتك بلغتين، احفظ ملفًا لكل لغة للنص والتعليقات، واجمع كل فرق آخر في كائن واحد مثل edition.
#2 · صيغ داخل خلايا الجدول
// A cell, a caption or a note sets $…$ as the text does (postext ≥ 1.19): MathJax paths at
// the cell's 8 pt, on the baseline of its line and aligned with the cell, vector in the PDF.
// The faces' latin files have no α or β (gotcha: latin-subset); the formulas need none.
const [CELL_PT, PAD] = [8, 1]; // cell type (pt), cell padding (mm)
function tableModel(tsv, widths, headerRows, merges = [], right = []) {
let model = { ...parseTSV(tsv, { headerRows }), columnWidths: widths };
model.rows.forEach((_, row) => right.forEach((c) => {
model = setAlignment(model, { row, col: c }, 'right'); // the numbers, the PPV and their heads
}));
for (const range of merges) model = mergeCells(model, range); // gotcha: merged-cells-hiddenby
return model;
}
// "Research finding" over both header rows, "True relationship" over Yes, No and Total.
const twoByTwo = (tsv) => tableModel(tsv, [1.1, 1.6, 1.6, 2.5], 2, [
{ start: { row: 0, col: 0 }, end: { row: 1, col: 0 } },
{ start: { row: 0, col: 1 }, end: { row: 0, col: 3 } }]);
// Table 4's last column is computed from Eq. (2), α = 0.05: two significant figures, as in 2005.
const ppv = (power, R, u, alpha = 0.05) => (power * R + u * (1 - power) * R)
/ (R + alpha - (1 - power) * R + u - u * alpha + u * (1 - power) * R);
const read = (s) => Number(s.replace(',', '.'));
const odds = (s) => s.split(':').map((x) => Number(x.replace(/\D/g, ''))).reduce((a, b) => a / b);
const ppvRows = (tsv) => tsv.split('\n').map((line, r) => {
const [power, R, u, example, head] = line.split('\t');
const p = ppv(read(power), odds(R), read(u)); // 0.0010: as many decimals as 2 figures need
return [power, R, u, example, r ? number(p, 1 - Math.floor(Math.log10(p))) : head].join('\t');
}).join('\n');
منذ postext 1.19 تنضّد خلية الجدول $…$ كما ينضّدها النص، فالخلية المكتوبة في TSV بالشكل $c(1-\beta)R/(R+1)$ صيغةٌ: مسارات MathJax بحجم 8 pt الخاص بالخلايا، على خط أساس سطر الخلية، فتقف Yes وNo والصيغ على سطر واحد، وتبقى خطوطًا متجهية في ملف PDF. لا تحوي ملفات latin في Fontsource حروفًا يونانية، ولا تحتاج إليها الصيغ. وتقبل التعليقات والحواشي الرياضيات أيضًا: يسمي تعليق الجدول 4 القوة الإحصائية 1 − β، وتفترض حاشيته α = 0.05، كما طُبعا في ورقة 2005. ويحاذي setAlignment أرقام الجدول 4 إلى اليمين، ويمد mergeCells عنوان Research finding على صفي الرأس، وTrue relationship على ثلاثة أعمدة، ويكتب الخلايا المخفية التي تحتاجها الخلية المدمجة.
#3 · الجداول والتعليقات من الخانة، والأرقام من الصيغة
const parsed = blocks.trim().split(/\n\s*\n/).map((block) => {
const fields = {};
const tsv = block.split('\n').filter((line) => {
const m = /^(id|caption|note|alt): (.*)$/.exec(line);
if (m) fields[m[1]] = m[2];
return !m;
}).join('\n');
return { ...fields, tsv };
});
const tables = parsed.filter((b) => b.tsv).map(({ id, caption, note, tsv }) => {
const model = id === 'tbl-ppv'
? tableModel(ppvRows(tsv), [0.8, 0.95, 0.75, 3.8, 1.05], 1, [], [0, 1, 2, 4])
: twoByTwo(tsv);
return { id, typeId: 'table', kind: 'table', createdAt: 0, updatedAt: 0, caption, note,
table: { model }, placement: { position: 'auto', ...(id !== 'tbl-ppv' && { span: 'page' }) } };
});
const figures = parsed.filter((b) => !b.tsv).map(({ id, caption, note, alt }) => ({ id,
typeId: 'figure', kind: 'svg', createdAt: 0, updatedAt: 0, caption, note, altText: alt,
placement: { position: 'auto', span: 'page' },
svg: { fileId: `${id}.svg`, width: FIG_W * 10, height: FIG_H * 10 } }));
const resources = [...tables, ...figures,
{ id: 'band-art', typeId: 'figure', kind: 'svg', createdAt: 0, updatedAt: 0,
svg: { fileId: 'band-art.svg', width: 1400, height: BAND * 10 } }];
const tableStyle = { rules: 'horizontal', borderColor: col('rule'), borderWidth: pt(0.5),
headerBackground: col('navy'), headerColor: col('paper'), headerBold: true,
headerFontFamily: SANS, headerFontSize: pt(CELL_PT), bodyFontFamily: SANS,
bodyFontSize: pt(CELL_PT), bodyColor: col('ink'), cellPadding: mm(PAD) };
const captionStyle = { fontFamily: SANS, fontSize: pt(8.2), color: col('ink'), labelBold: true,
labelColor: col('accent'), gap: mm(2), note: { fontSize: pt(7), color: col('muted') } };
الجداول والتعليقات والحواشي والنصوص البديلة موجودة في content.resources.<lang>.md، كتلة لكل مورد، فلا يعدّل المترجم إلا ملفات نصية، ولا تحمل كل طبعة إلا لغتها. ولا يُكتب عمود PPV في الجدول 4 باليد: تحسبه ppv() من القوة الإحصائية وR وu في كل صف، وتطابق القيم التسع ما طُبع عام 2005 في رقمين معنويين. وتطفو الجداول بالقيمة position: 'auto'، فيستطيع الجدول 1 أن يأخذ أسفل الصفحة التي تستشهد به بدل أن يتكدس مع العناصر الطافية الأخرى في الصفحة التالية.
#4 · الشكل 1 مرسومًا من المعادلة (2)
const R2 = (x) => Math.round(x * 100) / 100;
// An SVG drawn as a picture cannot use the page's web fonts (gotcha: svg-no-webfonts): the
// figures carry the label face inline under its own name, which the PDF asks the provider for.
async function inlineFace(family, weight) {
const id = family.toLowerCase().replace(/\s+/g, '-');
const url = `https://cdn.jsdelivr.net/npm/@fontsource/${id}@5/files/${id}-latin-${weight}`
+ '-normal.woff2';
const bytes = new Uint8Array(await (await fetch(url)).arrayBuffer());
let bin = '';
for (const b of bytes) bin += String.fromCharCode(b);
return `@font-face{font-family:'${family}';font-weight:${weight};`
+ `src:url(data:font/woff2;base64,${btoa(bin)}) format('woff2')}`;
}
const mix = (f) => `#${[1, 3, 5].map((i) => Math.round(parseInt(palette.navy.slice(i, i + 2), 16)
* (1 - f) + parseInt(palette.accent.slice(i, i + 2), 16) * f).toString(16).padStart(2, '0'))
.join('')}`; // navy for the first curve, vermilion for the last
const label = (x, y, s, size, extra = '', fill = palette.muted) => `<text x="${R2(x)}" `
+ `y="${R2(y)}" font-size="${size}" font-family="${SANS}" fill="${fill}" ${extra}>${s}</text>`;
const line = (points, stroke, width, extra = '') => `<path d="M${points.map(([x, y]) =>
`${R2(x)} ${R2(y)}`).join('L')}" fill="none" stroke="${stroke}" stroke-width="${width}" `
+ `${extra}/>`;
// Three panels, power 0.80, 0.50 and 0.20; PPV in % against R from 0 to 1, one curve per value.
function panels(face, curve, values, name, digits, dashed) {
const [pw, top, plotH, left] = [52, 12, 34, 8]; // panel width, plot top and height, y labels
let out = `<style>${face}</style>`;
[0.8, 0.5, 0.2].forEach((power, p) => {
const x0 = p * (pw + (FIG_W - 3 * pw) / 2) + left;
const X = (R) => x0 + R * (pw - left - 2);
const Y = (v) => top + plotH * (1 - v);
const trace = (f) => Array.from({ length: 101 }, (_, k) => [X(k / 100), Y(f(k / 100))]);
out += label(x0 - left, 4, `${'ABC'[p]} <tspan font-weight="400">${t({ en: 'Power',
es: 'Potencia' })} ${number(power)}</tspan>`, 3.4, '', palette.navy);
if (!p) out += label(x0 - left, top - 4, t({ en: 'PPV (%)', es: 'VPP (%)' }), 2.8);
for (const v of [0, 0.2, 0.4, 0.6, 0.8, 1]) {
out += line([[X(0), Y(v)], [X(1), Y(v)]], palette.rule, v ? 0.15 : 0.3)
+ label(X(0) - 1.4, Y(v) + 1, v * 100, 2.6, 'text-anchor="end"')
+ label(X(v), Y(0) + 3.6, number(v, v % 1 ? 1 : 0), 2.6, 'text-anchor="middle"');
}
if (dashed) out += line(trace((R) => dashed(power, R)), palette.muted, 0.35,
'stroke-dasharray="1 0.8"');
values.forEach((value, i) => {
out += line(trace((R) => curve(power, R, value)), mix(i / (values.length - 1)), 0.6);
});
out += label(X(0.5), Y(0) + 8, `${t({ en: 'Pre-study odds', es: 'Razón previa' })}, `
+ '<tspan font-style="italic">R</tspan>', 2.9, 'text-anchor="middle"');
});
const key = values.map((value, i) => line([[48 + i * 24, 57.8], [54 + i * 24, 57.8]],
mix(i / (values.length - 1)), 0.8) + label(56 + i * 24, 58.8, `<tspan font-style="italic">`
+ `${name}</tspan> = ${number(value, digits)}`, 2.9)).join('');
return `<svg xmlns="http://www.w3.org/2000/svg" width="${FIG_W * 10}" height="${FIG_H * 10}" `
+ `viewBox="0 0 ${FIG_W} ${FIG_H}">${out}${key}</svg>`;
}
// Eq. (3): n independent studies of equal power, no bias.
const teams = (power, R, n, alpha = 0.05) => (R * (1 - (1 - power) ** n))
/ (R + 1 - (1 - alpha) ** n - R * (1 - power) ** n);
const bandArt = () => `<svg xmlns="http://www.w3.org/2000/svg" width="1400" height="${BAND * 10}" `
+ `viewBox="0 0 140 ${BAND}">${Array.from({ length: 10 }, (_, i) => line(Array.from(
{ length: 81 },
(_, k) => [10 + k * 1.6, 92 - 76 * ppv(0.8, k / 80, i / 10)]), palette.mist, 0.5,
`stroke-opacity="${R2(0.5 - i * 0.04)}"`)).join('')}</svg>`;
تمر كل لوحة على R من 0 إلى 1 بالدالة ppv() نفسها التي تملأ الجدول 4. ورسم المنحنيات من الصيغة يكشف أمرًا يخفيه شكل 2005: منحنياته توافق u = 0 و0.05 و0.20 و0.80، بينما يقول مفتاحه 0.05 و0.20 و0.50 و0.80. وترسم هذه النسخة قيم المفتاح، وتضيف منحنى انعدام الانحياز متقطعًا، وتذكر ذلك في حاشية التعليق. والتسميات نص بخط التسميات: يحمل ملف SVG الخط مضمّنًا في @font-face من أجل اللوحة، وينضّدها ملف PDF بالخط الذي يقدمه مزوّد الخطوط.
#5 · صفحة أولى وإطار لمقال
const text = (id, content, family, size, color, placement, extra) => ({ kind: 'text', id,
content, fontFamily: family, fontSize: pt(size), color: col(color), align: 'left',
overflow: 'wrap', placement, ...extra });
const at = (to, edge, x, y, width) => ({ anchor: { to, edge }, offset: { x: mm(x), y: mm(y) },
...(width && { size: { width: mm(width), height: 'auto' } }) });
const caps = (size, fontWeight = 700) => ({ fontWeight, letterSpacing: pt(size * 0.18),
textTransform: 'uppercase' });
const BAND = 100; // mm from the top of the trim to the foot of the band
const titleBlock = { enabled: true, minHeight: mm(BAND + 12 - TOP), slot: { elements: [
{ kind: 'box', id: 'band', style: { backgroundColor: col('navy') },
placement: { anchor: { to: 'bleed', edge: 'top-left' },
size: { width: 'fill', height: mm(BAND + 3) } } }, // + the 3 mm bleed
{ kind: 'image', id: 'curves', resourceId: 'band-art', // Eq. (2), faint, for u = 0 to 0.9
placement: at('page', 'top-left', 128, 46, 76) }, // under the title, clear of the text
text('kicker', '{attr.kicker}', SANS, 8, 'mist', at('page', 'top-left', INNER, 20, 120),
caps(8)),
text('title', '{titleText}', SANS, 36, 'paper', at('#kicker', 'below', 0, 6, 150),
{ fontWeight: 800, lineHeight: 1.02 }),
text('author', '{attr.author}', SERIF, 13, 'paper', at('#title', 'below', 0, 8, 150)),
text('affiliation', '{attr.affiliation}', SANS, 8, 'mist', at('#author', 'below', 0, 1.6, 150),
{ lineHeight: 1.35 }),
text('source', '{attr.source}', SANS, 7.4, 'muted', at('page', 'top-left', INNER, BAND + 4,
MEASURE), { lineHeight: 1.35 }),
] } };
العنوان هو العنوان الوحيد من المستوى الأول؛ ونمطه essay يمتد بعرض الصفحة ويرسم الشريط والتسمية والمؤلف والانتماءات وسطر المصدر من سمات العنوان، فلا تغيّر الطبعة الإسبانية إلا الكلمات. والملخص إطار بعرض الصفحة على أرضية ملونة. والإطار 1، وهو المثال المحلول، يطفو إلى أسفل صفحة بعرض العمودين وينضّد نصه في عمودين داخل الإطار. وتحتفظ النتائج اللازمة بشكلها في الورقة، بالقضية بخط عريض في أول الفقرة: يضع :chip[Corollary 1]{style="corollary"} قبلها تسمية قرمزية صغيرة.
const calloutStyles = [
{ id: 'summary', span: 'page', background: col('tint'), marginTop: pt(0),
marginBottom: pt(LEAD), padding: { top: mm(4), right: mm(6), bottom: mm(4), left: mm(6) },
titleStyle: { fontFamily: SANS, fontSize: pt(8), ...caps(8), color: col('accent'),
gap: mm(1.5) },
body: { fontSize: pt(9.4), lineHeight: pt(13), firstLineIndent: pt(0) } },
{ id: 'box', span: 'page', placement: 'bottom', columnGap: mm(GUTTER),
backgroundEnabled: false, border: { enabled: false },
stripe: { enabled: true, side: 'top', width: pt(2.5), color: col('navy') },
padding: { top: mm(2.5), right: mm(0), bottom: mm(1), left: mm(0) },
marginTop: pt(LEAD), marginBottom: pt(LEAD),
titleStyle: { fontFamily: SANS, fontSize: pt(9), fontWeight: 700, color: col('navy'),
gap: mm(1.2) },
body: { fontFamily: SANS, fontSize: pt(8.4), lineHeight: pt(11.2), firstLineIndent: mm(3) } },
];
// :chip[Corollary 1]{style="corollary"}: a label in the sans and the accent, no frame.
const chipStyles = [{ id: 'corollary', fontFamily: SANS, fontSize: em(0.86), bold: true,
color: col('accent'), backgroundEnabled: false, borderWidth: pt(0), paddingX: em(0),
gap: em(0.35) }];
const paragraphStyles = [{ id: 'colophon', fontFamily: SANS, fontSize: pt(7.6),
lineHeight: pt(10.4), color: col('muted'), boldColor: col('ink'), textAlign: 'left',
firstLineIndent: pt(0), spaceBetween: pt(3) }];
الوصفة كاملة
// ═══ Postext Cookbook · Nº 141 · A metascience essay in English and Spanish ═══════ // https://postext.dev/en/cookbook/bilingual-metascience-essay // Code: MIT · Text: J. P. A. Ioannidis, PLoS Med 2005 (CC BY) · Figures: drawn in code (CC BY 4.0) // Fonts: Gelasio, Sofia Sans Semi Condensed (SIL OFL 1.1) · Needs postext ≥ 1.19.0 import { buildDocument, renderPageToCanvas, clearMeasurementCache, registerResourceImage, registerCitationEngine, defaultResourceTypes, initMathEngine, parseTSV, mergeCells, setAlignment, } from 'https://esm.sh/postext?bundle'; import { renderToPdf, decompressWoff2 } from 'https://esm.sh/postext-pdf'; import { createCiteprocEngine, STYLES, LOCALES } from 'https://esm.sh/postext-citeproc'; const LANG = 'en'; // @lang: the language of the sample document ('en' | 'es') const RECIPE = 'bilingual-metascience-essay'; // ─── 1 · Design ───────────────────────────────────────────────────────────── // #region palette: a navy for the furniture, one vermilion accent, every colour linked const palette = { ink: '#1c1d24', navy: '#22305a', accent: '#b8442a', tint: '#eceff5', rule: '#b4bccb', muted: '#5a6070', mist: '#c3cde6', paper: '#ffffff' }; const col = (id) => ({ hex: palette[id], model: 'hex', paletteId: id }); const colorPalette = Object.entries({ ...palette, 'main-color': palette.navy }) .map(([id, hex]) => ({ id, name: id, value: { hex, model: 'hex' } })); // #endregion const [SERIF, SANS] = ['Gelasio', 'Sofia Sans Semi Condensed']; // mm: the 210 × 280 trim, head, foot, inner and outer margins, and the gutter const [TRIM_W, TRIM_H, TOP, BOTTOM, INNER, OUTER, GUTTER] = [210, 280, 22, 22, 19, 17, 6]; const MEASURE = TRIM_W - INNER - OUTER; // 174 mm across both columns const [BODY, LEAD] = [9.4, 13]; // pt const [FIG_W, FIG_H] = [MEASURE, 60]; // mm: Figures 1 and 2, across both columns // #region answer: one script, two editions: LANG picks the text, the language and the numbers // The Cookbook composes the pen once per edition: content.<LANG>.md and each named slot // replace the @content markers. What else follows the language is set here. const edition = { // Hyphenation patterns and the words the engine writes (Tabla, Continúa) follow the // locale, an exact code (gotcha: hyphenation-locales). locale: t({ en: 'en-us', es: 'es' }), // Table 1 / Tabla 1, Figure 1 / Figura 1, counted through the essay; tables caption above. resourceTypes: defaultResourceTypes(LANG).map((type) => ({ ...type, shortLabel: type.name, numberingTemplate: '{n}', resetOn: 'never', ...(type.id === 'table' && { captionStyle: { position: 'above' } }) })), // Vancouver numbers in brackets, [2–4]; the CSL locale writes the list's words (2nd ed., // 2.ª ed.). 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Formulas keep their symbols; content.es.md writes 0{,}05 inside $…$ // so that TeX sets no space after the comma. const number = (x, digits = 2) => x.toLocaleString(t({ en: 'en-US', es: 'es-ES' }), { minimumFractionDigits: digits, maximumFractionDigits: digits }); registerCitationEngine(createCiteprocEngine({ styles: STYLES, locales: LOCALES })); await initMathEngine(); // before the tables are built (gotcha: math-bundle) // #endregion // #region title: the essay's first page: a navy band with the title, author and source const text = (id, content, family, size, color, placement, extra) => ({ kind: 'text', id, content, fontFamily: family, fontSize: pt(size), color: col(color), align: 'left', overflow: 'wrap', placement, ...extra }); const at = (to, edge, x, y, width) => ({ anchor: { to, edge }, offset: { x: mm(x), y: mm(y) }, ...(width && { size: { width: mm(width), height: 'auto' } }) }); const caps = (size, fontWeight = 700) => ({ fontWeight, letterSpacing: pt(size * 0.18), textTransform: 'uppercase' }); const BAND = 100; // mm from the top of the trim to the foot of the band const titleBlock = { enabled: true, minHeight: mm(BAND + 12 - TOP), slot: { elements: [ { kind: 'box', id: 'band', style: { backgroundColor: col('navy') }, placement: { anchor: { to: 'bleed', edge: 'top-left' }, size: { width: 'fill', height: mm(BAND + 3) } } }, // + the 3 mm bleed { kind: 'image', id: 'curves', resourceId: 'band-art', // Eq. 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title: "Why Most Published Research Findings Are False" author: "John P. A. Ioannidis" --- # Why Most Published Research Findings Are False {style="essay" kicker="Essay · Research methods" author="John P. A. Ioannidis" affiliation="University of Ioannina School of Medicine, Ioannina, Greece\nTufts University School of Medicine, Boston, Massachusetts, United States" source="Originally published in PLoS Medicine 2(8): e124, 30 August 2005 · doi:10.1371/journal.pmed.0020124 · © 2005 John P. A. Ioannidis, Creative Commons Attribution License"} :::callout{type="summary" title="Summary"} There is increasing concern that most current published research findings are false. The probability that a research claim is true may depend on study power and bias, the number of other studies on the same question, and, importantly, the ratio of true to no relationships among the relationships probed in each scientific field. In this framework, a research finding is less likely to be true when the studies conducted in a field are smaller; when effect sizes are smaller; when there is a greater number and lesser preselection of tested relationships; where there is greater flexibility in designs, definitions, outcomes, and analytical modes; when there is greater financial and other interest and prejudice; and when more teams are involved in a scientific field in chase of statistical significance. Simulations show that for most study designs and settings, it is more likely for a research claim to be false than true. Moreover, for many current scientific fields, claimed research findings may often be simply accurate measures of the prevailing bias. In this essay, I discuss the implications of these problems for the conduct and interpretation of research. ::: Published research findings are sometimes refuted by subsequent evidence, with ensuing confusion and disappointment. Refutation and controversy is seen across the range of research designs, from clinical trials and traditional epidemiological studies [@ioannidis2001a; @lawlor2004; @vandenbroucke2004] to the most modern molecular research [@michiels2005; @ioannidis2001b]. There is increasing concern that in modern research, false findings may be the majority or even the vast majority of published research claims [@colhoun2003; @ioannidis2003; @ioannidis2005a]. However, this should not be surprising. It can be proven that most claimed research findings are false. Here I will examine the key factors that influence this problem and some corollaries thereof. ## Modeling the Framework for False Positive Findings Several methodologists have pointed out [@sterne2001; @wacholder2004; @risch2000] that the high rate of nonreplication (lack of confirmation) of research discoveries is a consequence of the convenient, yet ill-founded strategy of claiming conclusive research findings solely on the basis of a single study assessed by formal statistical significance, typically for a *p*-value less than 0.05. As has been shown previously, the probability that a research finding is indeed true depends on the prior probability of it being true (before doing the study), the statistical power of the study, and the level of statistical significance [@wacholder2004; @risch2000]. Consider a 2 × 2 table in which research findings are compared against the gold standard of true relationships in a scientific field. In a research field both true and false hypotheses can be made about the presence of relationships. Let $R$ be the ratio of the number of “true relationships” to “no relationships” among those tested in the field. $R$ is characteristic of the field and can vary a lot depending on whether the field targets highly likely relationships or searches for only one or a few true relationships among thousands and millions of hypotheses that may be postulated. Let us also consider, for computational simplicity, circumscribed fields where either there is only one true relationship (among many that can be hypothesized) or the power is similar to find any of the several existing true relationships. The pre-study probability of a relationship being true is $R/(R+1)$. The probability of a study finding a true relationship reflects the power $1-\beta$ (one minus the Type II error rate). The probability of claiming a relationship when none truly exists reflects the Type I error rate, $\alpha$. Assuming that $c$ relationships are being probed in the field, the expected values of the 2 × 2 table are given in :ref{id="tbl-truth"}. After a research finding has been claimed based on achieving formal statistical significance, the post-study probability that it is true is the positive predictive value, PPV. The PPV is also the complementary probability of what Wacholder et al. have called the false positive report probability [@wacholder2004]. According to the 2 × 2 table, one gets $$\mathrm{PPV} = \frac{(1-\beta)R}{R-\beta R+\alpha}. \tag{1}$$ A research finding is thus more likely true than false if $(1-\beta)R > \alpha$. Since usually the vast majority of investigators depend on $\alpha = 0.05$, this means that a research finding is more likely true than false if $(1-\beta)R > 0.05$. What is less well appreciated is that bias and the extent of repeated independent testing by different teams of investigators around the globe may further distort this picture and may lead to even smaller probabilities of the research findings being indeed true. We will try to model these two factors in the context of similar 2 × 2 tables. ## Bias First, let us define bias as the combination of various design, data, analysis, and presentation factors that tend to produce research findings when they should not be produced. Let $u$ be the proportion of probed analyses that would not have been “research findings,” but nevertheless end up presented and reported as such, because of bias. Bias should not be confused with chance variability that causes some findings to be false by chance even though the study design, data, analysis, and presentation are perfect. Bias can entail manipulation in the analysis or reporting of findings. Selective or distorted reporting is a typical form of such bias. We may assume that $u$ does not depend on whether a true relationship exists or not. This is not an unreasonable assumption, since typically it is impossible to know which relationships are indeed true. In the presence of bias (:ref{id="tbl-bias"}), one gets $$\mathrm{PPV} = \frac{[1-\beta]R+u\beta R}{R+\alpha-\beta R+u-u\alpha+u\beta R}, \tag{2}$$ and PPV decreases with increasing $u$, unless $1-\beta \le \alpha$, i.e., $1-\beta \le 0.05$ for most situations. Thus, with increasing bias, the chances that a research finding is true diminish considerably. This is shown for different levels of power and for different pre-study odds in :ref{id="fig-bias"}. ## Testing by Several Independent Teams Several independent teams may be addressing the same sets of research questions. As research efforts are globalized, it is practically the rule that several research teams, often dozens of them, may probe the same or similar questions. The probability that at least one study, among several done on the same question, claims a statistically significant research finding is easy to estimate. For $n$ independent studies of equal power, the 2 × 2 table is shown in :ref{id="tbl-teams"}: $$\mathrm{PPV} = \frac{R(1-\beta^n)}{R+1-[1-\alpha]^n-R\beta^n} \tag{3}$$ (not considering bias). With increasing number of independent studies, PPV tends to decrease, unless $1-\beta < \alpha$, i.e., typically $1-\beta < 0.05$. This is shown for different levels of power and for different pre-study odds in :ref{id="fig-teams"}. For $n$ studies of different power, the term $\beta^n$ is replaced by the product of the terms $\beta_i$ for $i = 1$ to $n$, but inferences are similar.`, // title, summary, the model, bias, several teams String.raw`## Corollariesنموذج Markdown · أسطر: 22 · content.corollaries.en.md
A practical example is shown in Box 1. Based on the above considerations, one may deduce several interesting corollaries about the probability that a research finding is indeed true. :::callout{type="box" title="Box 1. An Example: Science at Low Pre-Study Odds"} :::columns{count=2} Let us assume that a team of investigators performs a whole genome association study to test whether any of 100,000 gene polymorphisms are associated with susceptibility to schizophrenia. Based on what we know about the extent of heritability of the disease, it is reasonable to expect that probably around ten gene polymorphisms among those tested would be truly associated with schizophrenia, with relatively similar odds ratios around 1.3 for the ten or so polymorphisms and with a fairly similar power to identify any of them. Then $R = 10/100{,}000 = 10^{-4}$, and the pre-study probability for any polymorphism to be associated with schizophrenia is also $R/(R+1) = 10^{-4}$. Let us also suppose that the study has 60% power to find an association with an odds ratio of 1.3 at $\alpha = 0.05$. Then it can be estimated that if a statistically significant association is found with the *p*-value barely crossing the 0.05 threshold, the post-study probability that this is true increases about 12-fold compared with the pre-study probability, but it is still only $12 \times 10^{-4}$. Now let us suppose that the investigators manipulate their design, analyses, and reporting so as to make more relationships cross the *p* = 0.05 threshold even though this would not have been crossed with a perfectly adhered to design and analysis and with perfect comprehensive reporting of the results, strictly according to the original study plan. In the presence of bias with $u = 0.10$, the post-study probability that a research finding is true is only $4.4 \times 10^{-4}$. Furthermore, even in the absence of any bias, when ten independent research teams perform similar experiments around the world, if one of them finds a formally statistically significant association, the probability that the research finding is true is only $1.5 \times 10^{-4}$, hardly any higher than the probability we had before any of this extensive research was undertaken! ::: ::: :chip[Corollary 1]{style="corollary"} **The smaller the studies conducted in a scientific field, the less likely the research findings are to be true.** Small sample size means smaller power and, for all functions above, the PPV for a true research finding decreases as power decreases towards $1-\beta = 0.05$. Thus, other factors being equal, research findings are more likely true in scientific fields that undertake large studies, such as randomized controlled trials in cardiology (several thousand subjects randomized) [@yusuf1984] than in scientific fields with small studies, such as most research of molecular predictors (sample sizes 100-fold smaller) [@altman2000]. :chip[Corollary 2]{style="corollary"} **The smaller the effect sizes in a scientific field, the less likely the research findings are to be true.** Power is also related to the effect size. Thus research findings are more likely true in scientific fields with large effects, such as the impact of smoking on cancer or cardiovascular disease (relative risks 3–20), than in scientific fields where postulated effects are small, such as genetic risk factors for multigenetic diseases (relative risks 1.1–1.5) [@ioannidis2003]. Modern epidemiology is increasingly obliged to target smaller effect sizes [@taubes1995]. Consequently, the proportion of true research findings is expected to decrease. :chip[Corollary 3]{style="corollary"} **The greater the number and the lesser the selection of tested relationships in a scientific field, the less likely the research findings are to be true.** As shown above, the post-study probability that a finding is true (PPV) depends a lot on the pre-study odds ($R$). Thus, research findings are more likely true in confirmatory designs, such as large phase III randomized controlled trials, or meta-analyses thereof, than in hypothesis-generating experiments. Fields considered highly informative and creative given the wealth of the assembled and tested information, such as microarrays and other high-throughput discovery-oriented research [@michiels2005; @ioannidis2005a; @golub1999], should have extremely low PPV. :chip[Corollary 4]{style="corollary"} **The greater the flexibility in designs, definitions, outcomes, and analytical modes in a scientific field, the less likely the research findings are to be true.** Flexibility increases the potential for transforming what would be “negative” results into “positive” results, i.e., bias, $u$. For several research designs, e.g., randomized controlled trials [@moher2001; @ioannidis2004; @ich1999] or meta-analyses [@moher1999; @stroup2000], there have been efforts to standardize their conduct and reporting. Adherence to common standards is likely to increase the proportion of true findings. Regardless, even in the most stringent research designs, bias seems to be a major problem. For example, there is strong evidence that selective outcome reporting, with manipulation of the outcomes and analyses reported, is a common problem even for randomized trials [@chan2004]. Simply abolishing selective publication would not make this problem go away. :chip[Corollary 5]{style="corollary"} **The greater the financial and other interests and prejudices in a scientific field, the less likely the research findings are to be true.** Conflicts of interest and prejudice may increase bias, $u$. Conflicts of interest are very common in biomedical research [@krimsky1998], and typically they are inadequately and sparsely reported [@krimsky1998; @papanikolaou2001]. Prejudice may not necessarily have financial roots. Scientists in a given field may be prejudiced purely because of their belief in a scientific theory or commitment to their own findings. Prestigious investigators may suppress via the peer review process the appearance and dissemination of findings that refute their findings, thus condemning their field to perpetuate false dogma. Empirical evidence on expert opinion shows that it is extremely unreliable [@antman1992]. :chip[Corollary 6]{style="corollary"} **The hotter a scientific field (with more scientific teams involved), the less likely the research findings are to be true.** This seemingly paradoxical corollary follows because, as stated above, the PPV of isolated findings decreases when many teams of investigators are involved in the same field. This may explain why we occasionally see major excitement followed rapidly by severe disappointments in fields that draw wide attention. The term Proteus phenomenon has been coined to describe this phenomenon of rapidly alternating extreme research claims and extremely opposite refutations [@ioannidis2005b]. Empirical evidence suggests that this sequence of extreme opposites is very common in molecular genetics [@ioannidis2005b].`, // Box 1 and the six corollaries String.raw`## Most Research Findings Are False for Most Research Designs and for Most Fieldsنموذج Markdown · أسطر: 34 · content.close.en.md
In the described framework, a PPV exceeding 50% is quite difficult to get. :ref{id="tbl-ppv"} provides the results of simulations using the formulas developed for the influence of power, ratio of true to non-true relationships, and bias, for various types of situations that may be characteristic of specific study designs and settings. A finding from a well-conducted, adequately powered randomized controlled trial starting with a 50% pre-study chance that the intervention is effective is eventually true about 85% of the time. A fairly similar performance is expected of a confirmatory meta-analysis of good-quality randomized trials: potential bias probably increases, but power and pre-test chances are higher compared to a single randomized trial. Conversely, a meta-analytic finding from inconclusive studies where pooling is used to “correct” the low power of single studies, is probably false if $R \le 1{:}3$. Research findings from underpowered, early-phase clinical trials would be true about one in four times, or even less frequently if bias is present. Epidemiological studies of an exploratory nature perform even worse, especially when underpowered, but even well-powered epidemiological studies may have only a one in five chance being true, if $R = 1{:}10$. Finally, in discovery-oriented research with massive testing, where tested relationships exceed true ones 1,000-fold (e.g., 30,000 genes tested, of which 30 may be the true culprits) [@ntzani2003; @ransohoff2004], PPV for each claimed relationship is extremely low, even with considerable standardization of laboratory and statistical methods, outcomes, and reporting thereof to minimize bias. ## Claimed Research Findings May Often Be Simply Accurate Measures of the Prevailing Bias As shown, the majority of modern biomedical research is operating in areas with very low pre- and post-study probability for true findings. Let us suppose that in a research field there are no true findings at all to be discovered. In such a “null field,” one would ideally expect all observed effect sizes to vary by chance around the null in the absence of bias. The extent that observed findings deviate from what is expected by chance alone would be simply a pure measure of the prevailing bias. For example, let us suppose that no nutrients or dietary patterns are actually important determinants for the risk of developing a specific tumor. Let us also suppose that the scientific literature has examined 60 nutrients and claims all of them to be related to the risk of developing this tumor with relative risks in the range of 1.2 to 1.4 for the comparison of the upper to lower intake tertiles. Then the claimed effect sizes are simply measuring nothing else but the net bias that has been involved in the generation of this scientific literature. Claimed effect sizes are in fact the most accurate estimates of the net bias. It even follows that between “null fields,” the fields that claim stronger effects (often with accompanying claims of medical or public health importance) are simply those that have sustained the worst biases. For fields with very low PPV, the few true relationships would not distort this overall picture much. Even if a few relationships are true, the shape of the distribution of the observed effects would still yield a clear measure of the biases involved in the field. This concept totally reverses the way we view scientific results. Traditionally, investigators have viewed large and highly significant effects with excitement, as signs of important discoveries. Too large and too highly significant effects may actually be more likely to be signs of large bias in most fields of modern research. They should lead investigators to careful critical thinking about what might have gone wrong with their data, analyses, and results. ## How Can We Improve the Situation? Is it unavoidable that most research findings are false, or can we improve the situation? A major problem is that it is impossible to know with 100% certainty what the truth is in any research question. In this regard, the pure “gold” standard is unattainable. However, there are several approaches to improve the post-study probability. Better powered evidence, e.g., large studies or low-bias meta-analyses, may help, as it comes closer to the unknown “gold” standard. However, large studies may still have biases and these should be acknowledged and avoided. Moreover, one should be cautious that extremely large studies may be more likely to find a formally statistical significant difference for a trivial effect that is not really meaningfully different from the null [@lindley1957; @bartlett1957; @senn2001]. Second, most research questions are addressed by many teams, and it is misleading to emphasize the statistically significant findings of any single team. What matters is the totality of the evidence. Diminishing bias through enhanced research standards and curtailing of prejudices may also help. However, this may require a change in scientific mentality that might be difficult to achieve. In some research designs, efforts may also be more successful with upfront registration of studies, e.g., randomized trials [@deangelis2004]. Registration would pose a challenge for hypothesis-generating research. Some kind of registration or networking of data collections or investigators within fields may be more feasible than registration of each and every hypothesis-generating experiment. Regardless, even if we do not see a great deal of progress with registration of studies in other fields, the principles of developing and adhering to a protocol could be more widely borrowed from randomized controlled trials. Finally, instead of chasing statistical significance, we should improve our understanding of the range of $R$ values—the pre-study odds—where research efforts operate [@wacholder2004]. Before running an experiment, investigators should consider what they believe the chances are that they are testing a true rather than a non-true relationship. Speculated high $R$ values may sometimes then be ascertained. As described above, whenever ethically acceptable, large studies with minimal bias should be performed on research findings that are considered relatively established, to see how often they are indeed confirmed. I suspect several established “classics” will fail the test [@ioannidis2005c]. Nevertheless, most new discoveries will continue to stem from hypothesis-generating research with low or very low pre-study odds. We should then acknowledge that statistical significance testing in the report of a single study gives only a partial picture, without knowing how much testing has been done outside the report and in the relevant field at large. Despite a large statistical literature for multiple testing corrections [@hsueh2003], usually it is impossible to decipher how much data dredging by the reporting authors or other research teams has preceded a reported research finding. Even if determining this were feasible, this would not inform us about the pre-study odds. Thus, it is unavoidable that one should make approximate assumptions on how many relationships are expected to be true among those probed across the relevant research fields and research designs. Even though these assumptions would be considerably subjective, they would still be very useful in interpreting research claims and putting them in context. ## Article information {style="back"} :::paragraphs{style="colophon"} **Competing interests.** The author has declared that no competing interests exist. **Abbreviation.** PPV, positive predictive value. **This edition.** Abridged from J. P. A. Ioannidis, “Why Most Published Research Findings Are False”, *PLoS Medicine* 2(8): e124 (2005), doi:10.1371/journal.pmed.0020124, under the Creative Commons Attribution License. Some sentences and paragraphs are left out, the formulas are numbered, the tables and figures are redrawn and one typing slip is corrected. Set in Gelasio and Sofia Sans Semi Condensed (SIL OFL); formulas by MathJax. ::: ## References {style="back"} :::bibliography{title=""}`, // the last three sections and the back matter String.raw`:::references{format=bibtex}نموذج Markdown · أسطر: 98 · content.refs.en.md
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A. and Haug, C. and Hoey, J. and others}, title = {Clinical trial registration: a statement from the {International Committee of Medical Journal Editors}}, journal = {N Engl J Med}, year = 2004, volume = 351, pages = {1250--1251}} @article{ioannidis2005c, author = {Ioannidis, J. P. A.}, title = {Contradicted and initially stronger effects in highly cited clinical research}, journal = {JAMA}, year = 2005, volume = 294, pages = {218--228}} @article{hsueh2003, author = {Hsueh, H. M. and Chen, J. J. and Kodell, R. L.}, title = {Comparison of methods for estimating the number of true null hypotheses in multiplicity testing}, journal = {J Biopharm Stat}, year = 2003, volume = 13, pages = {675--689}} :::`, // the references as BibTeX, shared by both editions ].join('\n\n'); // Captions, notes and the tables as tab-separated text with TeX in the cells, one block each. const blocks = String.raw`id: tbl-truthنموذج Markdown · أسطر: 46 · content.resources.en.md
caption: Research Findings and True Relationships Research finding True relationship Yes No Total Yes $c(1-\beta)R/(R+1)$ $c\alpha/(R+1)$ $c(R+\alpha-\beta R)/(R+1)$ No $c\beta R/(R+1)$ $c(1-\alpha)/(R+1)$ $c(1-\alpha+\beta R)/(R+1)$ Total $cR/(R+1)$ $c/(R+1)$ $c$ id: tbl-bias caption: Research Findings and True Relationships in the Presence of Bias Research finding True relationship Yes No Total Yes $(c[1-\beta]R+uc\beta R)/(R+1)$ $c\alpha+uc(1-\alpha)/(R+1)$ $c(R+\alpha-\beta R+u-u\alpha+u\beta R)/(R+1)$ No $(1-u)c\beta R/(R+1)$ $(1-u)c(1-\alpha)/(R+1)$ $c(1-u)(1-\alpha+\beta R)/(R+1)$ Total $cR/(R+1)$ $c/(R+1)$ $c$ id: tbl-teams caption: Research Findings and True Relationships in the Presence of Multiple Studies Research finding True relationship Yes No Total Yes $cR(1-\beta^n)/(R+1)$ $c(1-[1-\alpha]^n)/(R+1)$ $c(R+1-[1-\alpha]^n-R\beta^n)/(R+1)$ No $cR\beta^n/(R+1)$ $c(1-\alpha)^n/(R+1)$ $c([1-\alpha]^n+R\beta^n)/(R+1)$ Total $cR/(R+1)$ $c/(R+1)$ $c$ id: tbl-ppv caption: PPV of Research Findings for Various Combinations of Power ($1-\beta$), Ratio of True to Not-True Relationships ($R$), and Bias ($u$) note: The estimated PPVs (positive predictive values) are derived assuming $\alpha = 0.05$ for a single study; here they are computed from Eq. (2).\\RCT, randomized controlled trial. $1-\beta$ $R$ $u$ Practical example PPV 0.80 1:1 0.10 Adequately powered RCT with little bias and 1:1 pre-study odds 0.95 2:1 0.30 Confirmatory meta-analysis of good-quality RCTs 0.80 1:3 0.40 Meta-analysis of small inconclusive studies 0.20 1:5 0.20 Underpowered, but well-performed phase I/II RCT 0.20 1:5 0.80 Underpowered, poorly performed phase I/II RCT 0.80 1:10 0.30 Adequately powered exploratory epidemiological study 0.20 1:10 0.30 Underpowered exploratory epidemiological study 0.20 1:1,000 0.80 Discovery-oriented exploratory research with massive testing 0.20 1:1,000 0.20 As in previous example, but with more limited bias (more standardized) id: fig-bias caption: PPV (Probability That a Research Finding Is True) as a Function of the Pre-Study Odds for Various Levels of Bias, $u$ note: Panels correspond to power of 0.80, 0.50, and 0.20. Drawn in code from Eq. (2) for the values of $u$ in the 2005 legend, with no bias ($u = 0$) dashed; the curves printed in 2005 match $u = 0$, 0.05, 0.20 and 0.80. alt: Three panels of rising curves: PPV grows with the pre-study odds and falls as bias grows. id: fig-teams caption: PPV (Probability That a Research Finding Is True) as a Function of the Pre-Study Odds for Various Numbers of Conducted Studies, $n$ note: Panels correspond to power of 0.80, 0.50, and 0.20. Drawn in code from Eq. (3). alt: Three panels of rising curves: PPV falls as more teams test the same question.`; // #region tables: TSV in, a merged header, and the $…$ cells set as formulas by the engine // A cell, a caption or a note sets $…$ as the text does (postext ≥ 1.19): MathJax paths at // the cell's 8 pt, on the baseline of its line and aligned with the cell, vector in the PDF. // The faces' latin files have no α or β (gotcha: latin-subset); the formulas need none. const [CELL_PT, PAD] = [8, 1]; // cell type (pt), cell padding (mm) function tableModel(tsv, widths, headerRows, merges = [], right = []) { let model = { ...parseTSV(tsv, { headerRows }), columnWidths: widths }; model.rows.forEach((_, row) => right.forEach((c) => { model = setAlignment(model, { row, col: c }, 'right'); // the numbers, the PPV and their heads })); for (const range of merges) model = mergeCells(model, range); // gotcha: merged-cells-hiddenby return model; } // "Research finding" over both header rows, "True relationship" over Yes, No and Total. const twoByTwo = (tsv) => tableModel(tsv, [1.1, 1.6, 1.6, 2.5], 2, [ { start: { row: 0, col: 0 }, end: { row: 1, col: 0 } }, { start: { row: 0, col: 1 }, end: { row: 0, col: 3 } }]); // Table 4's last column is computed from Eq. (2), α = 0.05: two significant figures, as in 2005. const ppv = (power, R, u, alpha = 0.05) => (power * R + u * (1 - power) * R) / (R + alpha - (1 - power) * R + u - u * alpha + u * (1 - power) * R); const read = (s) => Number(s.replace(',', '.')); const odds = (s) => s.split(':').map((x) => Number(x.replace(/\D/g, ''))).reduce((a, b) => a / b); const ppvRows = (tsv) => tsv.split('\n').map((line, r) => { const [power, R, u, example, head] = line.split('\t'); const p = ppv(read(power), odds(R), read(u)); // 0.0010: as many decimals as 2 figures need return [power, R, u, example, r ? number(p, 1 - Math.floor(Math.log10(p))) : head].join('\t'); }).join('\n'); // #endregion // #region resources: each block of the slot is a table or a figure, placed where it is cited const parsed = blocks.trim().split(/\n\s*\n/).map((block) => { const fields = {}; const tsv = block.split('\n').filter((line) => { const m = /^(id|caption|note|alt): (.*)$/.exec(line); if (m) fields[m[1]] = m[2]; return !m; }).join('\n'); return { ...fields, tsv }; }); const tables = parsed.filter((b) => b.tsv).map(({ id, caption, note, tsv }) => { const model = id === 'tbl-ppv' ? tableModel(ppvRows(tsv), [0.8, 0.95, 0.75, 3.8, 1.05], 1, [], [0, 1, 2, 4]) : twoByTwo(tsv); return { id, typeId: 'table', kind: 'table', createdAt: 0, updatedAt: 0, caption, note, table: { model }, placement: { position: 'auto', ...(id !== 'tbl-ppv' && { span: 'page' }) } }; }); const figures = parsed.filter((b) => !b.tsv).map(({ id, caption, note, alt }) => ({ id, typeId: 'figure', kind: 'svg', createdAt: 0, updatedAt: 0, caption, note, altText: alt, placement: { position: 'auto', span: 'page' }, svg: { fileId: `${id}.svg`, width: FIG_W * 10, height: FIG_H * 10 } })); const resources = [...tables, ...figures, { id: 'band-art', typeId: 'figure', kind: 'svg', createdAt: 0, updatedAt: 0, svg: { fileId: 'band-art.svg', width: 1400, height: BAND * 10 } }]; const tableStyle = { rules: 'horizontal', borderColor: col('rule'), borderWidth: pt(0.5), headerBackground: col('navy'), headerColor: col('paper'), headerBold: true, headerFontFamily: SANS, headerFontSize: pt(CELL_PT), bodyFontFamily: SANS, bodyFontSize: pt(CELL_PT), bodyColor: col('ink'), cellPadding: mm(PAD) }; const captionStyle = { fontFamily: SANS, fontSize: pt(8.2), color: col('ink'), labelBold: true, labelColor: col('accent'), gap: mm(2), note: { fontSize: pt(7), color: col('muted') } }; // #endregion // #region art: Figures 1 and 2 drawn from Eqs. (2) and (3), the band's curves from Eq. (2) const R2 = (x) => Math.round(x * 100) / 100; // An SVG drawn as a picture cannot use the page's web fonts (gotcha: svg-no-webfonts): the // figures carry the label face inline under its own name, which the PDF asks the provider for. async function inlineFace(family, weight) { const id = family.toLowerCase().replace(/\s+/g, '-'); const url = `https://cdn.jsdelivr.net/npm/@fontsource/${id}@5/files/${id}-latin-${weight}` + '-normal.woff2'; const bytes = new Uint8Array(await (await fetch(url)).arrayBuffer()); let bin = ''; for (const b of bytes) bin += String.fromCharCode(b); return `@font-face{font-family:'${family}';font-weight:${weight};` + `src:url(data:font/woff2;base64,${btoa(bin)}) format('woff2')}`; } const mix = (f) => `#${[1, 3, 5].map((i) => Math.round(parseInt(palette.navy.slice(i, i + 2), 16) * (1 - f) + parseInt(palette.accent.slice(i, i + 2), 16) * f).toString(16).padStart(2, '0')) .join('')}`; // navy for the first curve, vermilion for the last const label = (x, y, s, size, extra = '', fill = palette.muted) => `<text x="${R2(x)}" ` + `y="${R2(y)}" font-size="${size}" font-family="${SANS}" fill="${fill}" ${extra}>${s}</text>`; const line = (points, stroke, width, extra = '') => `<path d="M${points.map(([x, y]) => `${R2(x)} ${R2(y)}`).join('L')}" fill="none" stroke="${stroke}" stroke-width="${width}" ` + `${extra}/>`; // Three panels, power 0.80, 0.50 and 0.20; PPV in % against R from 0 to 1, one curve per value. function panels(face, curve, values, name, digits, dashed) { const [pw, top, plotH, left] = [52, 12, 34, 8]; // panel width, plot top and height, y labels let out = `<style>${face}</style>`; [0.8, 0.5, 0.2].forEach((power, p) => { const x0 = p * (pw + (FIG_W - 3 * pw) / 2) + left; const X = (R) => x0 + R * (pw - left - 2); const Y = (v) => top + plotH * (1 - v); const trace = (f) => Array.from({ length: 101 }, (_, k) => [X(k / 100), Y(f(k / 100))]); out += label(x0 - left, 4, `${'ABC'[p]} <tspan font-weight="400">${t({ en: 'Power', es: 'Potencia' })} ${number(power)}</tspan>`, 3.4, '', palette.navy); if (!p) out += label(x0 - left, top - 4, t({ en: 'PPV (%)', es: 'VPP (%)' }), 2.8); for (const v of [0, 0.2, 0.4, 0.6, 0.8, 1]) { out += line([[X(0), Y(v)], [X(1), Y(v)]], palette.rule, v ? 0.15 : 0.3) + label(X(0) - 1.4, Y(v) + 1, v * 100, 2.6, 'text-anchor="end"') + label(X(v), Y(0) + 3.6, number(v, v % 1 ? 1 : 0), 2.6, 'text-anchor="middle"'); } if (dashed) out += line(trace((R) => dashed(power, R)), palette.muted, 0.35, 'stroke-dasharray="1 0.8"'); values.forEach((value, i) => { out += line(trace((R) => curve(power, R, value)), mix(i / (values.length - 1)), 0.6); }); out += label(X(0.5), Y(0) + 8, `${t({ en: 'Pre-study odds', es: 'Razón previa' })}, ` + '<tspan font-style="italic">R</tspan>', 2.9, 'text-anchor="middle"'); }); const key = values.map((value, i) => line([[48 + i * 24, 57.8], [54 + i * 24, 57.8]], mix(i / (values.length - 1)), 0.8) + label(56 + i * 24, 58.8, `<tspan font-style="italic">` + `${name}</tspan> = ${number(value, digits)}`, 2.9)).join(''); return `<svg xmlns="http://www.w3.org/2000/svg" width="${FIG_W * 10}" height="${FIG_H * 10}" ` + `viewBox="0 0 ${FIG_W} ${FIG_H}">${out}${key}</svg>`; } // Eq. (3): n independent studies of equal power, no bias. const teams = (power, R, n, alpha = 0.05) => (R * (1 - (1 - power) ** n)) / (R + 1 - (1 - alpha) ** n - R * (1 - power) ** n); const bandArt = () => `<svg xmlns="http://www.w3.org/2000/svg" width="1400" height="${BAND * 10}" ` + `viewBox="0 0 140 ${BAND}">${Array.from({ length: 10 }, (_, i) => line(Array.from( { length: 81 }, (_, k) => [10 + k * 1.6, 92 - 76 * ppv(0.8, k / 80, i / 10)]), palette.mist, 0.5, `stroke-opacity="${R2(0.5 - i * 0.04)}"`)).join('')}</svg>`; // #endregion // ─── 3 · Fonts ────────────────────────────────────────────────────────────── const FONTS = { // every face the pages paint, loaded before the first build (gotcha: fonts-first) Gelasio: ['400', '400i', '600', '700', '700i'], 'Sofia Sans Semi Condensed': ['400', '400i', '600', '700', '700i', '800'], }; // ─── 4 · Build & show ─────────────────────────────────────────────────────── await loadFonts(FONTS, markdown + blocks); const face = await inlineFace(SANS, 400); // one face: the figures set no bold await loadSvg('fig-bias.svg', panels(face, ppv, [0.05, 0.2, 0.5, 0.8], 'u', 2, (power, R) => ppv(power, R, 0))); await loadSvg('fig-teams.svg', panels(face, teams, [1, 5, 10, 50], 'n', 0)); await loadSvg('band-art.svg', bandArt()); const doc = await buildWithFonts(() => buildDocument({ markdown, resources }, config()), markdown); showPages(doc, { title: t({ en: 'A metascience essay in English and Spanish', es: 'Un ensayo de metaciencia en inglés y en español' }) }); offerPdf(() => renderToPdf(doc, { fontProvider: fontsourceProvider, resourceBytes: imageBytes }), `${RECIPE}.pdf`); // text in the Fontsource faces; formulas and figures as vector pathsالعُدّة · core, fonts, viewer, pdf, images: نفسها في كل وصفة · أسطر: 310
// ─── Kit ── helpers shared by every Cookbook recipe · postext.dev/cookbook ───── // ─── Kit · core v1 ── the same in every recipe · postext.dev/cookbook ───────── function mm(value) { return { value, unit: 'mm' }; } function pt(value) { return { value, unit: 'pt' }; } function em(value) { return { value, unit: 'em' }; } /** The sample language's string: t({ en: 'Figure', es: 'Figura' }). */ function t(strings) { return strings[LANG] ?? Object.values(strings)[0]; } /** A file in this recipe's assets folder, served from the Postext repo by jsDelivr. */ function asset(file) { return `https://cdn.jsdelivr.net/gh/drnachio/postext@main/cookbook/${RECIPE}/assets/${file}`; } // ─── Kit · fonts v1 ── the same in every recipe · postext.dev/cookbook ──────── // Postext measures text with the faces the browser has loaded, and caches the // widths, so every face must be ready before the first build. Faces come from // Fontsource: the same static files the PDF embeds, so screen and PDF agree. /** faces = { 'Family Name': ['400', '400i', '700'] }. `text` is the sample: * letters beyond Latin-1 (č, ł, ő…) also load the latin-ext files. With * `optional`, a face Fontsource does not ship is skipped instead of failing. * Resolves to the number of faces added. */ async function loadFonts(faces, text = '', { optional = false } = {}) { kitStatus('Loading fonts…'); const ranges = { latin: 'U+0000-00FF,U+0131,U+0152-0153,U+02BB-02BC,U+02C6,U+02DA,U+02DC,U+0304,U+0308,U+0329,' + 'U+2000-206F,U+20AC,U+2122,U+2191,U+2193,U+2212,U+2215,U+FEFF,U+FFFD', 'latin-ext': 'U+0100-02BA,U+02BD-02C5,U+02C7-02CC,U+02CE-02D7,U+02DD-02FF,U+0304,U+0308,U+0329,' + 'U+1D00-1DBF,U+1E00-1E9F,U+1EF2-1EFF,U+2020,U+20A0-20AB,U+20AD-20C0,U+2113,U+2C60-2C7F,U+A720-A7FF', }; const subsets = /[Ā-˿Ḁ-ỿ]/.test(text) ? ['latin', 'latin-ext'] : ['latin']; const jobs = []; let added = 0; for (const [family, specs] of Object.entries(faces)) { const id = fontsourceId(family); const meta = optional ? await fontsourceMeta(family) : null; for (const spec of new Set(specs)) { const weight = parseInt(spec, 10); const style = spec.endsWith('i') ? 'italic' : 'normal'; if (hasFace(family, weight, style)) continue; if (optional && !(meta?.weights.includes(weight) && meta.styles.includes(style))) continue; for (const subset of subsets) { const url = `https://cdn.jsdelivr.net/npm/@fontsource/${id}@5/files/${id}-${subset}-${weight}-${style}.woff2`; const face = new FontFace(family, `url(${url}) format('woff2')`, { weight: String(weight), style, unicodeRange: ranges[subset] }); jobs.push(face.load().then((ready) => { document.fonts.add(ready); added++; }, () => { if (subset === 'latin' && !optional) throw new Error(`Fontsource has no ${family} ${weight} ${style}`); })); } } } await Promise.all(jobs).catch((error) => { kitFail(error); throw error; }); return added; } /** Runs `build` (a buildDocument or buildBundle call) and checks the faces * the pages use. A regular face missing from FONTS is loaded with a warning; * bold and italic variants are loaded when the family ships them. Then the * measurement caches are cleared and the build runs again. */ async function buildWithFonts(build, text = '') { const tried = new Set(); for (let round = 0; round < 3; round++) { kitStatus('Laying out…'); await new Promise(requestAnimationFrame); // let the status paint first const result = await Promise.resolve().then(build).catch((error) => { kitFail(error); throw error; }); const wanted = { base: {}, variants: {} }; for (const { font, base } of [result].flat().flatMap(fontStringsOf)) { const { family, weight, style } = parseFont(font); const key = `${family}|${weight}|${style}`; if (tried.has(key) || hasFace(family, weight, style)) continue; tried.add(key); (wanted[base ? 'base' : 'variants'][family] ??= []).push(`${weight}${style === 'italic' ? 'i' : ''}`); } if (Object.keys(wanted.base).length) { console.warn(`[cookbook] FONTS does not list ${JSON.stringify(wanted.base)}: loading them.`); } const added = await loadFonts(wanted.base, text) + await loadFonts(wanted.variants, text, { optional: true }); if (added === 0) return result; clearMeasurementCache(); } throw new Error('The fonts did not settle after three builds.'); } /** Every font string of the layout. `base` marks a block's own face; its * bold, italic and bold-italic variants are listed whether or not used. */ function fontStringsOf(doc) { const found = new Map(); const walk = (node) => { if (!node || typeof node !== 'object') return; if (Array.isArray(node)) { node.forEach(walk); return; } for (const [key, value] of Object.entries(node)) { if (typeof value === 'string' && /fontString$/i.test(key)) { found.set(value, found.get(value) || key === 'fontString'); } else if (value && typeof value === 'object') walk(value); } }; walk(doc.pages); walk(doc.blocks); return [...found].map(([font, base]) => ({ font, base })); } /** '700 37.5px Open Sans' / 'italic 400 13px "Source Serif 4"' → { family, weight, style }. * A string with no weight ('95.8px Young Serif', from a design text) is 400. */ function parseFont(font) { const m = /^(?:(italic|oblique)\s+)?(?:small-caps\s+)?(?:(\d+|bold|normal)\s+)?[\d.]+px\s+(.+)$/.exec(font.trim()); if (!m) throw new Error(`Unexpected font string: ${font}`); const weight = m[2] === 'bold' ? 700 : !m[2] || m[2] === 'normal' ? 400 : Number(m[2]); return { family: m[3].replace(/^["']|["']$/g, ''), weight, style: m[1] ? 'italic' : 'normal' }; } /** True when a loaded FontFace covers exactly this family, weight and style * (document.fonts.check() is also true for families nobody declared). */ function hasFace(family, weight, style) { for (const face of document.fonts) { if (face.status !== 'loaded' || face.style !== style) continue; if (face.family.replace(/^["']|["']$/g, '') !== family) continue; const [low, high = low] = face.weight.split(' ').map(Number); if (weight >= low && weight <= high) return true; } return false; } /** Fontsource's id for a family: 'Source Serif 4' → 'source-serif-4'. */ function fontsourceId(family) { return family.toLowerCase().replace(/\s+/g, '-'); } /** The weights and styles a family ships ({ weights: [400, 700], styles: ['normal', 'italic'] }), or null. */ function fontsourceMeta(family) { fontsourceMeta.cache ??= new Map(); const id = fontsourceId(family); if (!fontsourceMeta.cache.has(id)) { fontsourceMeta.cache.set(id, fetch(`https://api.fontsource.org/v1/fonts/${id}`) .then((res) => (res.ok ? res.json() : null), () => null)); } return fontsourceMeta.cache.get(id); } // ─── Kit · viewer v1 ── the same in every recipe · postext.dev/cookbook ─────── /** Shows the pages as facing spreads on a dark desk: the first page is a * recto on its own, then verso | recto pairs, as in a bound book. Pages * are painted when they scroll near the screen. */ function showPages(docs, { title, width = 460 } = {}) { const root = viewer(title); const pages = [docs].flat().flatMap((doc) => doc.pages.map((page) => ({ doc, page, n: (doc.pageIndexOffset ?? 0) + page.index }))); const spreads = []; let verso = null; for (const p of pages) { if (p.n % 2 === 1) { if (verso) spreads.push([verso, null]); verso = p; } else { spreads.push([verso, p]); verso = null; } } if (verso) spreads.push([verso, null]); const density = Math.min(window.devicePixelRatio || 1, 2); showPages.painter?.disconnect(); const painter = new IntersectionObserver((entries) => { for (const { isIntersecting, target } of entries) { if (!isIntersecting) continue; painter.unobserve(target); const { doc, page } = target.postext; renderPageToCanvas(page, doc, target, { scale: (width * density) / page.width }); } }, { rootMargin: '800px' }); showPages.painter = painter; root.replaceChildren(...spreads.map((pair) => { const spread = document.createElement('div'); spread.className = 'pt-spread'; for (const p of pair) { const figure = document.createElement('figure'); if (p) { const label = p.page.pageLabel || String(p.n + 1); const canvas = document.createElement('canvas'); canvas.postext = p; canvas.style.aspectRatio = `${p.page.width} / ${p.page.height}`; canvas.setAttribute('role', 'img'); canvas.setAttribute('aria-label', `Page ${label}`); const folio = document.createElement('figcaption'); folio.textContent = label; figure.append(canvas, folio); painter.observe(canvas); } else figure.className = 'pt-blank'; spread.append(figure); } return spread; })); kitStatus(`${pages.length} ${pages.length === 1 ? 'page' : 'pages'}`); document.documentElement.dataset.postext = 'ready'; return pages.length; } /** The desk, the bar and the error reporting, created once. */ function viewer(title) { if (!document.getElementById('pt-kit')) { document.head.insertAdjacentHTML('beforeend', `<style id="pt-kit"> :root { color-scheme: dark; } body { margin: 0; background: #0e1014; color: #b9bcc4; font: 13px/1.45 system-ui, sans-serif; } #pt-bar { position: sticky; top: 0; z-index: 1; display: flex; flex-wrap: wrap; align-items: center; gap: 6px 16px; padding: 10px 16px; background: rgb(14 16 20 / .92); backdrop-filter: blur(6px); border-bottom: 1px solid #23262d; } #pt-bar strong { color: #f4f1ea; font-weight: 600; } #pt-actions { display: flex; gap: 12px; margin-left: auto; } #pt-actions a, #pt-actions button { color: #d8a21a; font: inherit; background: none; border: 0; padding: 0; cursor: pointer; } #pages { display: grid; justify-items: center; gap: 48px; padding: 32px 16px 72px; } .pt-spread { display: flex; } .pt-spread figure { margin: 0; width: min(460px, 44vw); } .pt-spread canvas { display: block; width: 100%; background: #fff; box-shadow: 0 1px 2px rgb(0 0 0 / .5), 0 22px 44px -16px rgb(0 0 0 / .8); } .pt-spread figure:first-child canvas { box-shadow: inset -14px 0 14px -14px rgb(0 0 0 / .18), 0 1px 2px rgb(0 0 0 / .5), 0 22px 44px -16px rgb(0 0 0 / .8); } .pt-spread figcaption { margin-top: 10px; text-align: center; font: 600 10px/1 system-ui, sans-serif; letter-spacing: .18em; text-transform: uppercase; color: #6c7079; } .pt-blank { visibility: hidden; } @media (max-width: 760px) { .pt-spread { flex-direction: column; gap: 32px; } .pt-spread figure { width: min(460px, 92vw); } .pt-blank { display: none; } } </style>`); document.body.insertAdjacentHTML('afterbegin', '<header id="pt-bar"><strong id="pt-title"></strong><span id="pt-status" role="status"></span><span id="pt-actions"></span></header>'); document.getElementById('pt-title').textContent = document.title || 'Postext'; addEventListener('error', (event) => kitFail(event.error ?? event.message)); addEventListener('unhandledrejection', (event) => kitFail(event.reason)); } if (title) document.getElementById('pt-title').textContent = title; return document.getElementById('pages') ?? document.body.appendChild(Object.assign(document.createElement('main'), { id: 'pages' })); } function kitStatus(text) { viewer(); document.getElementById('pt-status').textContent = text; } function kitFail(error) { document.documentElement.dataset.postext = 'error'; kitStatus(`Error: ${error?.message ?? error}`); } // ─── Kit · pdf v1 ── the same in every recipe that exports a PDF ────────────── /** postext-pdf embeds TrueType bytes. Fetch the Fontsource file the screen * used, snapping to a weight the family ships and falling back to upright * when it has no italic: the PDF asks for every face a block could use. */ async function fontsourceProvider(family, weight, style) { const id = fontsourceId(family); const meta = await fontsourceMeta(family); const weights = meta?.weights?.length ? meta.weights : [400, 700]; const w = weights.reduce((a, b) => (Math.abs(b - weight) < Math.abs(a - weight) ? b : a)); const s = style === 'italic' && meta && !meta.styles.includes('italic') ? 'normal' : style; const res = await fetch(`https://cdn.jsdelivr.net/npm/@fontsource/${id}@5/files/${id}-latin-${w}-${s}.woff2`); if (!res.ok) throw new Error(`Fontsource has no ${family} ${w} ${s} (${res.status})`); return decompressWoff2(new Uint8Array(await res.arrayBuffer())); } /** A "Build the PDF" button in the bar. Once built: "Open the PDF" (a new * tab, since CodePen's preview frame cannot show PDFs) and a download link. */ function offerPdf(makePdf, filename) { viewer(); const button = Object.assign(document.createElement('button'), { type: 'button', textContent: 'Build the PDF' }); button.dataset.postextPdf = filename; button.addEventListener('click', async () => { button.disabled = true; button.textContent = 'Building the PDF…'; try { const bytes = await makePdf(); const url = URL.createObjectURL(new Blob([bytes], { type: 'application/pdf' })); const size = `${Math.max(1, Math.round(bytes.length / 1024))} KB`; button.replaceWith( Object.assign(document.createElement('a'), { href: url, target: '_blank', rel: 'noopener', textContent: 'Open the PDF ↗' }), Object.assign(document.createElement('a'), { href: url, download: filename, textContent: `Download ${filename} · ${size}` })); } catch (error) { button.disabled = false; button.textContent = 'Build the PDF'; kitFail(error); } }); document.getElementById('pt-actions').append(button); } // ─── Kit · images v1 ── recipes with pictures · postext.dev/cookbook ────────── /** Registers a photo or PNG for the canvas and keeps its bytes for the PDF. * fetch → ImageBitmap never taints the canvas (a plain cross-origin <img> would). */ async function loadImage(fileId, url) { const res = await fetch(url); if (!res.ok) throw new Error(`Image not found (${res.status}): ${url}`); const bytes = new Uint8Array(await res.arrayBuffer()); registerResourceImage(fileId, await createImageBitmap(new Blob([bytes]))); (loadImage.bytes ??= new Map()).set(fileId, bytes); } /** Registers SVG markup (drawn in code, or fetched) as a vector image. */ async function loadSvg(fileId, svg) { const img = new Image(); img.src = `data:image/svg+xml;charset=utf-8,${encodeURIComponent(svg)}`; await img.decode(); registerResourceImage(fileId, img); (loadImage.bytes ??= new Map()).set(fileId, new TextEncoder().encode(svg)); } /** renderToPdf({ resourceBytes: imageBytes }) */ function imageBytes(fileId) { return loadImage.bytes?.get(fileId); } /** renderToHtml({ resourceImageUrl: imageUrl }) */ function imageUrl(fileId) { const bytes = imageBytes(fileId); if (!bytes) return undefined; imageUrl.urls ??= new Map(); if (!imageUrl.urls.has(fileId)) { const type = /\.svg$/i.test(fileId) ? 'image/svg+xml' : /\.png$/i.test(fileId) ? 'image/png' : 'image/jpeg'; imageUrl.urls.set(fileId, URL.createObjectURL(new Blob([bytes], { type }))); } return imageUrl.urls.get(fileId); } // ─── /Kit ───────────────────────────────────────────────────────────────────────
يعمل ملف script.js المجمّع كما هو: الصقه في سكربت الوحدة (module) لأي صفحة، أو افتح الوصفة على CodePen. مجلد الوصفة على GitHub ↗ (يفتح في تبويب جديد)
تنويعات
#ارفع أرقام الاستشهاد
كثيرًا ما تنضّد المجلات الطبية أرقام فانكوفر مرفوعة.
- marker: 'brackets', collapseRanges: true,
+ marker: 'superscript', collapseRanges: true,#اطبع معرّفات DOI
لا يحتفظ BibTeX في هذه الوصفة بمعرّفات DOI، كي يبقى النص البرمجي ضمن حجمه. احتفظ بها في ملفك واطبعها روابط.
- labelWidth: mm(6.4), doi: 'hide' } },
+ labelWidth: mm(6.4), doi: 'link' } },#نضّد الجداول في عمود واحد
جدول 2×2 بصيغ أقصر يتسع له عمود واحد: احذف منه span: 'page'، كما في الجدول 4. وفي ورقة في عمودين بمعادلات مرقمة جدول في عمود واحد.
أخطاء شائعة
خطأ شائع
الرياضيات تحتاج إلى https://esm.sh/postext?bundle وinitMathEngine()
الصيغ المستوردة من https://esm.sh/postext ترسم مربعات رمادية دون أي خطأ. استورد كل الرموز من https://esm.sh/postext?bundle، دون أن تخلط بين العنوانين أبدًا، وانتظر initMathEngine() قبل البناء الأول. الرياضيات →
خطأ شائع
ملفات latin من Fontsource تُسقط الحروف خارج اللاتينية
يضمّن مزوّد PDF ملفات latin من Fontsource، وهي تغطي الإسبانية ونصوص أوروبا الغربية لكنها لا تغطي → و≈ و✓ و★ ولا الحروف اليونانية أو حروف أوروبا الوسطى؛ فتغيب تلك الحروف عن PDF. أبقِ نص PDF ضمن نطاق latin. الخطوط المضمَّنة في PDF →
خطأ شائع
8 لغات فقط تُقسَّم بالواصلة، بالرمز المطابق تمامًا
يتوفر تقسيم الكلمات بالواصلة للغات en-us وes وfr وde وit وpt وca وnl، بمطابقة تامة للرمز: 'es-ES' أو أي لغة أخرى تعود دون تنبيه إلى الإنجليزية الأمريكية. تقسيم الكلمات ولغة المستند →
خطأ شائع
ترجم Figure/Table بـ defaultResourceTypes(locale)
يضبط locale في الإعداد تقسيمَ الكلمات بالواصلة، لا التعليقات: من دون resourceTypes تقول الأنواع المدمجة Figure وTable بالإنجليزية. مرّر resourceTypes: defaultResourceTypes('es') للإسبانية؛ ولأي لغة أخرى اكتب الأسماء بنفسك في resourceTypes. «شكل» و«جدول» بلغتك →
خطأ شائع
النص داخل SVG في <img> لا يستطيع استخدام خطوط الويب
يُرسَم SVG صورةً، والصورة لا تصل إلى خطوط الويب في الصفحة، فتعود تسمياته إلى خط من النظام. حوّل النص إلى مسارات، أو ضمّن مجموعة فرعية بـ @font-face داخل SVG، أو انقل التسميات إلى التعليق. الأشكال والجداول بوصفها موارد →
خطأ شائع
علامة $ المجرّدة تفتح الرياضيات: اكتب \$
علامة الدولار تفتح رياضيات داخل السطر، فسعرٌ مثل $40 يبدأ صيغة. اكتب \$40. الهروب والمحارف الحرفية →
خطأ شائع
أي كائن headings يُلغي فاصل الصفحة قبل H1
ينتقل H1 افتراضيًا إلى صفحة فردية (always-odd)، لكن تمرير أي كائن headings يعيد ضبط هذا الافتراض، فتتوالى الفصول دون فاصل ولا يفعل span: 'page' شيئًا. أعد كتابة headings.levels[0].breakBefore: { enabled: true, parity } في كل إعداد. فصول تبدأ في صفحة فردية →
خطأ شائع
حمّل كل أوجه الخط قبل الإخراج
يقيس الإخراج النص بأوجه الخط التي حمّلها المتصفح ويخزّن العروض مؤقتًا، فالوجه الذي يصل بعد البناء الأول يترك فواصل أسطر خاطئة وملف PDF لم يعد يطابق الشاشة. حمّل كل وزن وكل نمط أولًا، واستدعِ clearMeasurementCache() قبل إعادة البناء إذا تأخر وصول أحدها. الخطوط قبل الإخراج →
خطأ شائع
ضع كل قيمة في الترويسة الأمامية (frontmatter) بين علامتي اقتباس
يقرأ YAML القيمة title: 1984 رقمًا، ويقرأ التاريخ كائن Date، والقيم غير النصية تُطبع فارغة في العناصر النائبة وتترك ملف PDF بلا عنوان. ضع كل قيمة بين علامتي اقتباس: title: "1984". البيانات الوصفية للمستند →
- حيث تتوقف قائمة 2005 عند خمسة مؤلفين ثم et al.، تنتهي قائمة المؤلفين في BibTeX بـ
and others، فيطبعelsevier-vancouverمكانها et al. (منذ postext 1.19؛ كانت الإصدارات السابقة تطبع مؤلفًا مشاركًا اسمه others). - لا تتطابق الصفحات بين الطبعتين: النص الإسباني أطول، فيقع الجدول 4 بعد صفحة. وتنشر اللقطة الصفحات 1 و2 و3 و5 و6 و7 من الطبعتين، كي تبقى الصور دون حد الحجم ويظهر الجدول 4 في كلتيهما.
الحقوق
- الوصفة
- Ignacio Ferro
- النص
- “Why Most Published Research Findings Are False”, PLoS Medicine 2(8): e124 (2005), doi:10.1371/journal.pmed.0020124, open access under the Creative Commons Attribution License; abridged, tables and figures redrawn; Spanish translation made for the Cookbook · John P. A. Ioannidis · CC BY
- الخطوط
- Gelasio (SIL OFL 1.1) · Sofia Sans Semi Condensed (SIL OFL 1.1)
- الكود
- MIT، مثل Postext
حرّر هذا الشرح ↗ (يفتح في تبويب جديد)مجلد الوصفة على GitHub ↗ (يفتح في تبويب جديد)


